In this tutorial, we will re-analyze the ATAC-seq data published in Yu, 2017.
The anaylsis requires following addition software:
All you need to do in this tutorial is preparing two files (input.tsv and config.yml) and typing a single command. Taiji will do the rest for you
If you are wondering what Taiji does under the hood, type taiji view taiji.html to generate an overview of the pipline. You can then use yourfavorite web browser to open the HTML file.
Now let's start the tutorial!
We will use the SRA ID as the input and Taiji will download the data for us. To do this, add the following lines to the "input.tsv" file: